Document Type : Original Article

Authors

1 Department of Biology, College of Alsalam, Al-Nahrain University, Baghdad, Iraq

2 Department of Biomedical technologies, College of Biotechnology, Al-Nahrain University, Baghdad, Iraq.

Abstract

Background: The genus Streptomyces Waksman & Henrici 1943 includes aerobic, gram-positive, and filamentous bacteria which produce well developed vegetative hyphae with branches. The wall consists of a large mixture of different compounds, including peptidoglycan, teichuronic acid, teichoic, and polysaccharides. The peptidoglycan components consist of glycan as a chains of irregular N-acetyl- d-muramic acid (NAM), diaminopimelic acid, and N-acetyl-d-glucosamine (NAG) and DAP, which is unique in the cell walls of prokaryotic microorganisms. The teichoic and teichuronic acid are chemically bonded to peptidoglycan.
Methods: One gram of soil samples was used to make suspension, by adding 99 mL of sterile distilled water (stock suspension) into it and shaking it in a shaker at 160 rpm for 30 minutes at room temperature. Serial dilutions from 0.1-0.001 were made from the stock suspension, and left for 10 minutes. After shaking, 0.1 mL of each dilution was cultured on Yeast Extract and Malt Extract agar (YEME) with Streptomycin 50 ug/mL. The inoculated plates were incubated at 28 °C for 7 to 10 days. Based on cultural characteristics, suspected colonies of Streptomyces were selected, which are characterized as small, white, pin-point, rough, chalky, and a clear zone of inhibition around them. These colonies were confirmed their identification by types of Gram’s stain, aerial and substrate mycelium color, pigment production, and pigment color.  Streptomyces were re-streaked on International Streptomyces project (ISP) to obtain pure colonies used for identification.  
Results: The current study aimed to screen bacteria Streptomyces isolates. Only 21 samples of soil were suspected to contain Streptomyces, and 45 isolates were obtained with different morphology types per samples of soil. The colonies suspects were selected basis on color that ranged from gray, white and creamy. The microscopic examination of local Streptomyces spp. after Gram-staining method was conducted. The observations revealed that local Streptomyces is gram positive and rod shaped similar to features of fungal in possessing branched mycelium. The Streptomyces produced extra cellular enzymes like amylase, urease, catalase, protease, Gelatinase, cellulase and phosphatase. Utilization of citrate was positive, with no Melanine reaction production and soluble pigmented, and negative for indole production.
Conclusion: The identification of the Streptomyces is a very complex process.  Morphological and biochemical characteristics are two important aspects for the classification in the Streptomycetaceae family. By studying the morphological, cultural, and biochemical characteristics, it is observed that the local isolates are belonging to the genus of Streptomyces.

Graphical Abstract

Screening of bacteria Streptomyces Waksman and Henrici 1943 (Streptomycetaceae) Isolates from Soil Samples in Iraq

Keywords

Main Subjects

  1. Anderson A S, Wellington E. (2001). The taxonomy of Streptomyces and related genera. International Journal of Systematic and Evolutionary Microbiology, 51(3): 797-814. https://doi.org/10.1099/00207713-51-3-797
  2. Labeda D P. (2011). Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces. International Journal of Systematic and Evolutionary Microbiology, 61(10): 2525-2531. https://doi.org/10.1099/ijs.0.028514-0
  3. Qasim B, Risan M H. (2017). Anti-tumor and Antimicrobial Activity of Antibiotic Produced by Streptomyces spp. World Journal of Pharmaceutical Research, 6(4): 116-128.
  4. Shobha K, Onkarappa R, Goutham S, Raghavendra H. (2012). Screening biological activities of a Streptomyces species isolated from soil of Agumbe, Karnataka, India. Int J Dug Dev Res, 4(3): 104-114.
  5. Yun T, Zhang M, Zhou D, Jing T, Zang X, Qi D, Chen Y, Li K, Zhao Y, Tang W. (2021). Anti-Foc RT4 Activity of a Newly Isolated Streptomyces sp. 5–10 From a Medicinal Plant (Curculigo capitulata). Frontiers in Microbiology, 11: 3544. https://doi.org/10.3389/fmicb.2020.610698
  6. Mahon C R, Lehman D C, Manuselis G. (2018). Textbook of diagnostic microbiology-e-book: Elsevier Health Sciences. 1088 pages,
  7. Davenport R J, Curtis T P, Goodfellow M, Stainsby F M, Bingley M. (2000). Quantitative use of fluorescent in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. Applied and environmental Microbiology, 66(3): 1158-1166. https://doi.org/10.1128/AEM.66.3.1158-1166.2000
  8. Das S, Lyla P, Khan S A. (2008). Distribution and generic composition of culturable marine actinomycetes from the sediments of Indian continental slope of Bay of Bengal. Chinese Journal of Oceanology and Limnology, 26(2): 166-177. https://doi.org/10.1007/s00343-008-0166-5
  9. T Abdulhameed Z. (2013). The isolation and study of morphological characterization of Streptomyces isolated from the soil as a source of active antibiotic. College Of Basic Education Researches Journal, 12(3): 745-752.
  10. Nonoh J O, Lw W, Masiga D, Herrmann R, Presnail J K, Schepers E, Okech M A, Bagine R, Mungai P, Nyende A B. (2010). Isolation and characterization of Streptomyces species with antifungal activity from selected national parks in Kenya. African Journal of Microbiology Research, 4(9): 856-864. https://doi.org/10.5897/AJMR.9000455
  11. Ali-Soufi M, Shahriari A, Shirmohammadi E, Fazeli-Nasab B. (2019). Investigation of Dust Microbial Community and Identification of its Dominance Species in Northern Regions of Sistan and Baluchestan Province. Journal of Water and Soil Science (Science and Technology of Agriculture and Natural Resources), 23(1): 309-320. https://doi.org/10.29252/jstnar.23.1.23
  12. Abbasi-Moghadam J, Shahriari A, Fazeli-Nasab B. (2017). Investigation of bacteria and fungi populations associated with airborne dust during ‘’wind of 120 days’’ blowing in the urban areas of Sistan plain. Paper presented at the 15th Iranian Soil Science Congress, Isfahan University of Technology, Isfahan, Iran, Congress COI: SSCI15, Article COI: SSCI15_687.
  13. Ali-Soufi M, Shahriari A, Shirmohammadi E, Fazeli-Nasab B. (2017). Identification and isolation of associated microorganisms with airborne dust loaded over Sistan plain. Paper presented at the 15th Iranian Soil Science Congress, Isfahan University of Technology, Isfahan, Iran, Congress COI: SSCI15, Article COI: SSCI15_895.
  14. Lapaz M, Huguet-Tapia J, Siri M, Verdier E, Loria R, Pianzzola M. (2017). Genotypic and phenotypic characterization of Streptomyces species causing potato common scab in Uruguay. Plant Disease, 101(8): 1362-1372. https://doi.org/10.1094/PDIS-09-16-1348-RE
  15. Wei Z, Xu C, Wang J, Lu F, Bie X, Lu Z. (2017). Identification and characterization of Streptomyces flavogriseus NJ-4 as a novel producer of actinomycin D and holomycin. PeerJ, 5: e3601. PubMed: 28740758
  16. Shariffah-Muzaimah S, Idris A, Madihah A, Dzolkhifli O, Kamaruzzaman S, Maizatul-Suriza M. (2018). Characterization of Streptomyces spp. isolated from the rhizosphere of oil palm and evaluation of their ability to suppress basal stem rot disease in oil palm seedlings when applied as powder formulations in a glasshouse trial. World Journal of Microbiology and Biotechnology, 34(1): 1-14. https://doi.org/10.1007/s11274-017-2396-1
  17. Yu Z, Han C, Yu B, Zhao J, Yan Y, Huang S, Liu C, Xiang W. (2020). Taxonomic characterization, and secondary metabolite analysis of Streptomyces triticiradicis sp. nov.: A novel actinomycete with antifungal activity. Microorganisms, 8(1): 77. https://doi.org/10.3390/microorganisms8010077
  18. Church D L. (2016). Biochemical tests for the identification of aerobic bacteria Clinical Microbiology Procedures Handbook, Fourth Edition (pp. 3.17. 11.11-13.17. 48.13): American Society of Microbiology.
  19. Odds F. (1981). Biochemical tests for identification of medical bacteria. Journal of Clinical Pathology, 34(5): 572. PMCID: PMC493360
  20. Ramazani A, Moradi S, Sorouri R, Javani S, Garshasbi M. (2013). Screening for antibacterial activity of Streptomyces species isolated from Zanjan province, Iran. Int J Pharm Chem Biol Sci, 3(2): 342-349.
  21. Ali-Soufi M, Shahriari A, Shirmohammadi E, Fazeli-Nasab B. (2017). Seasonal changes biological characteristics of airborne dust in Sistan plain, Eastern Iran. Paper presented at the International Conference on Loess Research, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan, Iran.
  22. Ali-Soufi M, Shahriari A, Shirmohammadi E, Fazeli-Nasab B. (2017). Investigation of biological properties and microorganism identification in susceptible areas to wind erosion in Hamoun wetlands. Paper presented at the Congress on restoration policies and approaches of Hamoun international wetland Zabol
  23. Saadoun I, Al-Joubori B, Al-Khoury R. (2015). Testing of production of inhibitory bioactive compounds by soil Streptomycetes as preliminary screening programs in UAE for anti-cancer and anti-bacterial drugs. Int. J. Curr. Microbiol. App. Sci, 4(3): 446-459.
  24. Zhou J-P, Gu Y-Q, Zou C-S, Mo M-H. (2007). Phylogenetic diversity of bacteria in an earth-cave in Guizhou Province, Southwest of China. Journal of microbiology, 45(2): 105-112.
  25. Portillo M C, Saiz-Jimenez C, Gonzalez J M. (2009). Molecular characterization of total and metabolically active bacterial communities of “white colonizations” in the Altamira Cave, Spain. Research in microbiology, 160(1): 41-47. https://doi.org/10.1016/j.resmic.2008.10.002
  26. Kariminik A, Baniasadi F. (2010). Pageantagonistic activity of Actinomycetes on some Gram negative and Gram positive bacteria. World Applied Sciences Journal, 8(7): 828-832.
  27. Augustine S, Bhavsar S, Kapadnis B. (2005). A non-polyene antifungal antibiotic from Streptomyces albidoflavus PU 23. Journal of Biosciences, 30(2): 201-211. https://doi.org/10.1007/BF02703700
  28. El-Naggar M Y, El-Assar S A, Abdul-Gawad S M. (2006). Meroparamycin production by newly isolated Streptomyces sp. strain MAR01: taxonomy, fermentation, purification and structural elucidation. Journal of microbiology, 44(4): 432-438.
  29. Rana S, Salam M. (2014). Antimicrobial potential of actinomycetes isolated from soil samples of Punjab. India. J Microbiol Exp, 1(2): 00010.
  30. Gupta R S. (1998). Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiology and Molecular Biology Reviews, 62(4): 1435-1491. https://doi.org/10.1128/MMBR.62.4.1435-1491.1998
  31. Gupta R S. (1998). What are archaebacteria: life's third domain or monoderm prokaryotes related to Gram-positive bacteria? A new proposal for the classification of prokaryotic organisms. Molecular microbiology, 29(3): 695-707. https://doi.org/10.1046/j.1365-2958.1998.00978.x
  32. Buchanan R, NE G. (1974). Bergey’s manual of determinative bacteriology, 7th edn, London. Bergey Taxon, 24: 377-378.
  33. Naine S J, Devi C S, Mohanasrinivasan V. (2014). Antimicrobial, Antioxidant and Cytotoxic Activity of Marine Streptomyces parvulus VITJS11 Crude Extract. Brazilian archives of biology and technology, 58: 198-207. https://doi.org/10.1590/S1516-8913201400173
  34. Aziz Z S, Al-Muhanna A S, Salman A J, Alzuhairi M A. (2014). Klebsiella and Raoultella biotyping and probability of identification by Vitek-2 system. IJIRSET, 3(4): 11289-11294.
  35. Garcia-Garrote F, Cercenado E, Bouza E. (2000). Evaluation of a new system, VITEK 2, for identification and antimicrobial susceptibility testing of enterococci. Journal of Clinical Microbiology, 38(6): 2108-2111. https://doi.org/10.1128/JCM.38.6.2108-2111.2000